Differential abundance analysis (genome level)
2024-01-26
Structural zeros
MAGs in different between location and shared between location
Total number only present in Ittoqqortoormii and absent in Daneborg
[1] 88Mags only present in Ittoqqortoormii with species-level annotation
genome phylum class
1 EHA01900_bin.41 p__Actinomycetota c__Coriobacteriia
2 EHA01902_bin.3 p__Pseudomonadota c__Gammaproteobacteria
3 EHA01902_bin.4 p__Pseudomonadota c__Gammaproteobacteria
4 EHA01903_bin.28 p__Pseudomonadota c__Gammaproteobacteria
5 EHA01904_bin.9 p__Bacillota c__Bacilli
6 EHA01905_bin.8 p__Bacillota_A c__Clostridia
7 EHA01907_bin.1 p__Bacteroidota c__Bacteroidia
8 EHA01908_bin.14 p__Bacteroidota c__Bacteroidia
9 EHA01908_bin.17 p__Bacillota_A c__Clostridia
10 EHA01908_bin.24 p__Bacteroidota c__Bacteroidia
11 EHA01908_bin.27 p__Bacillota_A c__Clostridia
12 EHA01911_bin.1 p__Bacillota_A c__Clostridia
13 EHA01913_bin.17 p__Actinomycetota c__Coriobacteriia
14 EHA01914_bin.12 p__Bacillota_A c__Clostridia
15 EHA01914_bin.20 p__Bacteroidota c__Bacteroidia
16 EHA01916_bin.21 p__Actinomycetota c__Coriobacteriia
17 EHA01916_bin.24 p__Bacillota c__Bacilli
18 EHA01916_bin.26 p__Bacillota_A c__Clostridia
19 EHA01918_bin.26 p__Actinomycetota c__Actinomycetia
20 EHA01918_bin.3 p__Bacillota_A c__Clostridia
21 EHA01919_bin.18 p__Fusobacteriota c__Fusobacteriia
22 EHA01921_bin.9 p__Bacillota c__Bacilli
23 EHA01922_bin.23 p__Bacillota_A c__Clostridia
24 EHA01922_bin.4 p__Bacteroidota c__Bacteroidia
25 EHA01924_bin.15 p__Bacillota_A c__Clostridia
26 EHA01924_bin.22 p__Bacillota c__Bacilli
27 EHA01926_bin.3 p__Actinomycetota c__Coriobacteriia
28 EHA01928_bin.3 p__Actinomycetota c__Coriobacteriia
29 EHA01928_bin.8 p__Bacillota c__Bacilli
30 EHA01958_bin.10 p__Bacillota_A c__Clostridia
31 EHA01958_bin.137 p__Actinomycetota c__Actinomycetia
32 EHA01958_bin.145 p__Bacillota_A c__Clostridia
33 EHA01958_bin.15 p__Bacillota_A c__Clostridia
34 EHA01958_bin.178 p__Bacillota_A c__Clostridia
35 EHA01958_bin.190 p__Bacteroidota c__Bacteroidia
36 EHA01958_bin.191 p__Bacteroidota c__Bacteroidia
37 EHA01958_bin.197 p__Bacillota_A c__Clostridia
38 EHA01958_bin.208 p__Bacillota_A c__Clostridia
39 EHA01958_bin.209 p__Bacillota c__Bacilli
40 EHA01958_bin.228 p__Bacillota_A c__Clostridia
41 EHA01958_bin.232 p__Bacillota_A c__Clostridia
42 EHA01958_bin.29 p__Bacillota_A c__Clostridia
43 EHA01958_bin.40 p__Bacteroidota c__Bacteroidia
44 EHA01958_bin.43 p__Bacillota c__Bacilli
45 EHA01958_bin.97 p__Bacillota c__Bacilli
order family genus
1 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
2 o__Enterobacterales_A f__Succinivibrionaceae g__Anaerobiospirillum
3 o__Burkholderiales f__Burkholderiaceae_A g__Parasutterella
4 o__Enterobacterales_A f__Succinivibrionaceae g__Anaerobiospirillum
5 o__Lactobacillales f__Enterococcaceae g__Enterococcus_B
6 o__Oscillospirales f__Ruminococcaceae g__Avimicrobium
7 o__Bacteroidales f__Bacteroidaceae g__Phocaeicola
8 o__Bacteroidales f__Tannerellaceae g__Parabacteroides
9 o__Lachnospirales f__Lachnospiraceae g__Ventrimonas
10 o__Bacteroidales f__Muribaculaceae g__Limisoma
11 o__Clostridiales f__Clostridiaceae g__Clostridium_H
12 o__Peptostreptococcales f__Peptostreptococcaceae g__Peptostreptococcus
13 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
14 o__Oscillospirales f__Ruminococcaceae g__Avimicrobium
15 o__Bacteroidales f__Bacteroidaceae g__Bacteroides
16 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
17 o__Lactobacillales f__Lactobacillaceae g__Lactobacillus
18 o__Oscillospirales f__Ruminococcaceae g__Avimicrobium
19 o__Actinomycetales f__Bifidobacteriaceae g__Bifidobacterium
20 o__Lachnospirales f__Lachnospiraceae g__Blautia_A
21 o__Fusobacteriales f__Fusobacteriaceae g__Cetobacterium_A
22 o__Lactobacillales f__Lactobacillaceae g__Limosilactobacillus
23 o__Clostridiales f__Clostridiaceae g__Clostridium_H
24 o__Bacteroidales f__Muribaculaceae g__Limisoma
25 o__Clostridiales f__Clostridiaceae g__Clostridium
26 o__Lactobacillales f__Catellicoccaceae g__Catellicoccus
27 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
28 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
29 o__Lactobacillales f__Streptococcaceae g__Lactococcus
30 o__Clostridiales f__Clostridiaceae g__Clostridium
31 o__Actinomycetales f__Bifidobacteriaceae g__Bifidobacterium
32 o__Clostridiales f__Clostridiaceae g__Clostridium
33 o__Clostridiales f__Clostridiaceae g__Clostridium_AH
34 o__Oscillospirales f__Ruminococcaceae g__Avimicrobium
35 o__Bacteroidales f__Tannerellaceae g__Parabacteroides
36 o__Bacteroidales f__Bacteroidaceae g__Bacteroides
37 o__Clostridiales f__Clostridiaceae g__Clostridium
38 o__Clostridiales f__Clostridiaceae g__Clostridium_H
39 o__Lactobacillales f__Enterococcaceae g__Enterococcus
40 o__Peptostreptococcales f__Peptostreptococcaceae g__Paraclostridium
41 o__Lachnospirales f__Anaerotignaceae g__Anaerotignum
42 o__Oscillospirales f__Oscillospiraceae g__Evtepia
43 o__Bacteroidales f__Bacteroidaceae g__Bacteroides
44 o__Lactobacillales f__Enterococcaceae g__Enterococcus_B
45 o__Lactobacillales f__Lactobacillaceae g__Lactobacillus
species
1 s__Collinsella sp900551665
2 s__Anaerobiospirillum succiniciproducens
3 s__Parasutterella gallistercoris
4 s__Anaerobiospirillum succiniciproducens
5 s__Enterococcus_B hirae
6 s__Avimicrobium sp934845495
7 s__Phocaeicola sp020026175
8 s__Parabacteroides merdae
9 s__Ventrimonas sp900538475
10 s__Limisoma sp900556245
11 s__Clostridium_H novyi
12 s__Peptostreptococcus russellii_A
13 s__Collinsella intestinalis
14 s__Avimicrobium sp934845495
15 s__Bacteroides stercoris
16 s__Collinsella intestinalis
17 s__Lactobacillus johnsonii
18 s__Avimicrobium sp934845495
19 s__Bifidobacterium adolescentis
20 s__Blautia_A massiliensis
21 s__Cetobacterium_A sp934085975
22 s__Limosilactobacillus reuteri
23 s__Clostridium_H novyi
24 s__Limisoma sp900541935
25 s__Clostridium neonatale
26 s__Catellicoccus marimammalium
27 s__Collinsella sp900551665
28 s__Collinsella intestinalis
29 s__Lactococcus lactis
30 s__Clostridium saudiense
31 s__Bifidobacterium longum
32 s__Clostridium celatum
33 s__Clostridium_AH fallax
34 s__Avimicrobium sp934845495
35 s__Parabacteroides distasonis
36 s__Bacteroides uniformis
37 s__Clostridium moniliforme
38 s__Clostridium_H novyi
39 s__Enterococcus faecalis
40 s__Paraclostridium sordellii
41 s__Anaerotignum sp001304995
42 s__Evtepia sp934597725
43 s__Bacteroides ovatus
44 s__Enterococcus_B faecium
45 s__Lactobacillus acidophilusNumber of MAGs present only in Ittoqqortoormii without species-level annotation
genome phylum class
1 EHA01905_bin.9 p__Pseudomonadota c__Gammaproteobacteria
2 EHA01906_bin.24 p__Actinomycetota c__Coriobacteriia
3 EHA01907_bin.8 p__Bacteroidota c__Bacteroidia
4 EHA01908_bin.19 p__Bacillota_A c__Clostridia
5 EHA01908_bin.42 p__Actinomycetota c__Coriobacteriia
6 EHA01909_bin.18 p__Fusobacteriota c__Fusobacteriia
7 EHA01911_bin.14 p__Actinomycetota c__Coriobacteriia
8 EHA01917_bin.3 p__Bacillota_A c__Clostridia
9 EHA01918_bin.20 p__Campylobacterota c__Campylobacteria
10 EHA01919_bin.3 p__Actinomycetota c__Coriobacteriia
11 EHA01921_bin.25 p__Actinomycetota c__Coriobacteriia
12 EHA01921_bin.29 p__Bacillota_A c__Clostridia
13 EHA01922_bin.35 p__Bacteroidota c__Bacteroidia
14 EHA01924_bin.29 p__Bacillota_A c__Clostridia
15 EHA01925_bin.24 p__Actinomycetota c__Coriobacteriia
16 EHA01926_bin.17 p__Bacillota_C c__Negativicutes
17 EHA01927_bin.26 p__Bacillota_A c__Clostridia
18 EHA01928_bin.26 p__Bacillota_A c__Clostridia
19 EHA01958_bin.113 p__Bacillota c__Bacilli
20 EHA01958_bin.114 p__Pseudomonadota c__Alphaproteobacteria
21 EHA01958_bin.162 p__Bacillota_A c__Clostridia
22 EHA01958_bin.166 p__Bacillota_A c__Clostridia
23 EHA01958_bin.175 p__Actinomycetota c__Coriobacteriia
24 EHA01958_bin.199 p__Bacillota_A c__Clostridia
25 EHA01958_bin.200 p__Bacillota_A c__Clostridia
26 EHA01958_bin.206 p__Bacillota_A c__Clostridia
27 EHA01958_bin.207 p__Bacillota_A c__Clostridia
28 EHA01958_bin.210 p__Bacillota_A c__Clostridia
29 EHA01958_bin.212 p__Actinomycetota c__Coriobacteriia
30 EHA01958_bin.218 p__Actinomycetota c__Coriobacteriia
31 EHA01958_bin.224 p__Bacillota_A c__Clostridia
32 EHA01958_bin.25 p__Bacillota c__Bacilli
33 EHA01958_bin.36 p__Bacillota_A c__Clostridia
34 EHA01958_bin.46 p__Bacillota_A c__Clostridia
35 EHA01958_bin.56 p__Bacillota_A c__Clostridia
36 EHA01958_bin.61 p__Bacillota_A c__Clostridia
37 EHA01958_bin.64 p__Bacillota_B c__Peptococcia
38 EHA01958_bin.71 p__Bacillota_A c__Clostridia
39 EHA01958_bin.78 p__Fusobacteriota c__Fusobacteriia
40 EHA01958_bin.7 p__Bacillota c__Bacilli
41 EHA01958_bin.94 p__Bacillota c__Bacilli
42 EHA01958_bin.98 p__Pseudomonadota c__Gammaproteobacteria
43 EHA01958_bin.99 p__Bacillota_A c__Clostridia
order family genus
1 o__Burkholderiales f__Burkholderiaceae_C g__Paenalcaligenes
2 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
3 o__Bacteroidales f__Bacteroidaceae g__Phocaeicola
4 o__Peptostreptococcales f__Anaerovoracaceae g__Gallibacter
5 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
6 o__Fusobacteriales f__Fusobacteriaceae g__Fusobacterium_A
7 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
8 o__Oscillospirales f__Oscillospiraceae g__Faecousia
9 o__Campylobacterales f__Helicobacteraceae g__Helicobacter_G
10 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
11 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
12 o__Peptostreptococcales f__Peptostreptococcaceae g__Romboutsia
13 o__Bacteroidales f__Bacteroidaceae g__Phocaeicola
14 o__Lachnospirales f__Lachnospiraceae g__Blautia
15 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
16 o__Selenomonadales f__Selenomonadaceae g__Megamonas
17 o__Clostridiales f__Clostridiaceae g__Clostridium_J
18 o__Clostridiales f__Clostridiaceae g__Clostridium
19 o__Erysipelotrichales f__Erysipelotrichaceae g__Holdemanella
20 o__Rhizobiales f__Beijerinckiaceae g__Rhodoblastus
21 o__Tissierellales f__Peptoniphilaceae g__Anaerosphaera
22 o__Lachnospirales f__Lachnospiraceae g__Blautia
23 o__Coriobacteriales f__Eggerthellaceae g__Slackia_A
24 o__Oscillospirales f__JAAYXM01 g__RGIG7332
25 o__Oscillospirales f__Ruminococcaceae g__Merdivicinus
26 o__Clostridiales f__Clostridiaceae g__Hathewaya
27 o__Clostridiales f__Clostridiaceae g__Clostridium_G
28 o__Lachnospirales f__CAG-274 g__
29 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
30 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
31 o__Clostridiales f__Clostridiaceae g__Clostridium
32 o__Haloplasmatales f__Turicibacteraceae g__Turicibacter
33 o__TANB77 f__ g__
34 o__Oscillospirales f__Ruminococcaceae g__RGIG3102
35 o__Clostridiales f__Clostridiaceae g__Clostridium_J
36 o__Oscillospirales f__Ruminococcaceae g__UBA866
37 o__Peptococcales f__Peptococcaceae g__UMGS1590
38 o__Oscillospirales f__Acutalibacteraceae g__Scybalenecus
39 o__Fusobacteriales f__Fusobacteriaceae g__Fusobacterium_A
40 o__Mycoplasmatales f__UBA3375 g__UBA3375
41 o__Acholeplasmatales f__Anaeroplasmataceae g__CALUXS01
42 o__Enterobacterales_A f__Succinivibrionaceae g__Anaerobiospirillum
43 o__Oscillospirales f__Oscillospiraceae g__Pseudoscilispira[1] 48.86364Total number only present in Daneborg and absent in Ittoqqortoormii
[1] 37Mags only present in Daneborg with species-level annotation
genome phylum class
1 EHA01875_bin.10 p__Actinomycetota c__Coriobacteriia
2 EHA01875_bin.16 p__Desulfobacterota c__Desulfovibrionia
3 EHA01878_bin.28 p__Actinomycetota c__Coriobacteriia
4 EHA01879_bin.8 p__Actinomycetota c__Coriobacteriia
5 EHA01879_bin.9 p__Bacillota c__Bacilli
6 EHA01882_bin.11 p__Actinomycetota c__Coriobacteriia
7 EHA01887_bin.10 p__Actinomycetota c__Coriobacteriia
8 EHA01887_bin.8 p__Pseudomonadota c__Gammaproteobacteria
9 EHA01888_bin.10 p__Actinomycetota c__Coriobacteriia
10 EHA01889_bin.12 p__Actinomycetota c__Coriobacteriia
11 EHA01890_bin.19 p__Pseudomonadota c__Gammaproteobacteria
12 EHA01893_bin.9 p__Bacillota c__Bacilli
13 EHA01894_bin.8 p__Actinomycetota c__Coriobacteriia
14 EHA01897_bin.2 p__Actinomycetota c__Coriobacteriia
15 EHA01929_bin.1 p__Bacillota_C c__Negativicutes
16 EHA01929_bin.65 p__Bacillota_A c__Clostridia
order family genus
1 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
2 o__Desulfovibrionales f__Desulfovibrionaceae g__Mailhella
3 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
4 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
5 o__Erysipelotrichales f__Erysipelotrichaceae g__Allobaculum
6 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
7 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
8 o__Enterobacterales_A f__Succinivibrionaceae g__Anaerobiospirillum
9 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
10 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
11 o__Enterobacterales_A f__Succinivibrionaceae g__Anaerobiospirillum
12 o__Erysipelotrichales f__Erysipelotrichaceae g__Allobaculum
13 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
14 o__Coriobacteriales f__Coriobacteriaceae g__Collinsella
15 o__Selenomonadales f__Selenomonadaceae g__Megamonas
16 o__Oscillospirales f__Butyricicoccaceae g__Butyricicoccus
species
1 s__Collinsella intestinalis
2 s__Mailhella sp020024815
3 s__Collinsella intestinalis
4 s__Collinsella intestinalis
5 s__Allobaculum stercoricanis
6 s__Collinsella intestinalis
7 s__Collinsella intestinalis
8 s__Anaerobiospirillum sp023051105
9 s__Collinsella intestinalis
10 s__Collinsella intestinalis
11 s__Anaerobiospirillum sp023051105
12 s__Allobaculum stercoricanis
13 s__Collinsella intestinalis
14 s__Collinsella intestinalis
15 s__Megamonas funiformis
16 s__Butyricicoccus sp018383195Number of MAGs present only in Daneborg without species-level annotation
genome phylum class
1 EHA01872_bin.15 p__Bacteroidota c__Bacteroidia
2 EHA01873_bin.15 p__Fusobacteriota c__Fusobacteriia
3 EHA01878_bin.6 p__Desulfobacterota c__Desulfovibrionia
4 EHA01887_bin.23 p__Fusobacteriota c__Fusobacteriia
5 EHA01887_bin.4 p__Bacteroidota c__Bacteroidia
6 EHA01890_bin.7 p__Bacillota c__Bacilli
7 EHA01892_bin.5 p__Fusobacteriota c__Fusobacteriia
8 EHA01894_bin.3 p__Bacillota_A c__Clostridia
9 EHA01895_bin.6 p__Desulfobacterota c__Desulfovibrionia
10 EHA01896_bin.26 p__Bacillota c__Bacilli
11 EHA01896_bin.35 p__Fusobacteriota c__Fusobacteriia
12 EHA01896_bin.36 p__Fusobacteriota c__Fusobacteriia
13 EHA01897_bin.11 p__Pseudomonadota c__Gammaproteobacteria
14 EHA01897_bin.23 p__Fusobacteriota c__Fusobacteriia
15 EHA01929_bin.112 p__Bacillota_A c__Clostridia
16 EHA01929_bin.130 p__Fusobacteriota c__Fusobacteriia
17 EHA01929_bin.143 p__Bacillota_A c__Clostridia
18 EHA01929_bin.152 p__Bacillota c__Bacilli
19 EHA01929_bin.32 p__Bacteroidota c__Bacteroidia
20 EHA01929_bin.42 p__Spirochaetota c__Brachyspirae
21 EHA01929_bin.62 p__Bacillota c__Bacilli
order family genus
1 o__Bacteroidales f__UBA932 g__Cryptobacteroides
2 o__Fusobacteriales f__Fusobacteriaceae g__Fusobacterium_A
3 o__Desulfovibrionales f__Desulfovibrionaceae g__Mailhella
4 o__Fusobacteriales f__Fusobacteriaceae g__
5 o__Bacteroidales f__Bacteroidaceae g__Alloprevotella
6 o__Haloplasmatales f__Turicibacteraceae g__Turicibacter
7 o__Fusobacteriales f__Fusobacteriaceae g__Fusobacterium_A
8 o__Oscillospirales f__Ruminococcaceae g__Faecalibacterium
9 o__Desulfovibrionales f__Desulfovibrionaceae g__Mailhella
10 o__Haloplasmatales f__Turicibacteraceae g__Turicibacter
11 o__Fusobacteriales f__Fusobacteriaceae g__Fusobacterium_A
12 o__Fusobacteriales f__Fusobacteriaceae g__Fusobacterium_A
13 o__Enterobacterales_A f__Succinivibrionaceae g__Anaerobiospirillum_A
14 o__Fusobacteriales f__Fusobacteriaceae g__Fusobacterium_A
15 o__Oscillospirales f__Oscillospiraceae g__Pseudoscilispira
16 o__Fusobacteriales f__Fusobacteriaceae g__Fusobacterium_A
17 o__Lachnospirales f__Lachnospiraceae g__Faecalimonas
18 o__Erysipelotrichales f__Erysipelotrichaceae g__CALVGN01
19 o__Bacteroidales f__Bacteroidaceae g__Phocaeicola_A
20 o__Brachyspirales f__Brachyspiraceae g__Brachyspira
21 o__Erysipelotrichales f__Coprobacillaceae g__Fimiplasma[1] 56.75676Phylum percentages
Daneborg
Phylum Mean SD
p__Fusobacteriota 39.86040326 9.50276145
p__Bacteroidota 33.46096983 10.28066834
p__Bacillota_A 11.71124356 5.59102631
p__Pseudomonadota 9.77011822 3.32682054
p__Bacillota 2.07262689 1.05420229
p__Bacillota_C 1.65309681 0.73666970
p__Actinomycetota 0.53422369 0.87082467
p__Deferribacterota 0.43183843 0.45976979
p__Campylobacterota 0.30217355 0.55610573
p__Desulfobacterota 0.10163448 0.20496300
p__Spirochaetota 0.05087026 0.08756671
p__Bacillota_B 0.05080102 0.10006683Ittoqqortoormii
Phylum Mean SD
p__Fusobacteriota 33.41194132 16.2729562
p__Bacteroidota 27.23737663 11.2373166
p__Bacillota_A 18.17611403 7.3137374
p__Pseudomonadota 9.78459118 7.1311314
p__Bacillota 4.55215410 5.3467364
p__Bacillota_C 3.77340513 5.7240774
p__Campylobacterota 1.48381289 2.1417871
p__Actinomycetota 0.86137102 0.8632284
p__Deferribacterota 0.35745975 0.6867294
p__Bacillota_B 0.27794229 0.5742640
p__Spirochaetota 0.08383167 0.2596527
p__Desulfobacterota 0.00000000 0.0000000Significantly different in taxonomy
Mann–Whitney U test (CLR data, without considering structural zeros)
Phylum
# A tibble: 3 × 3
Phylum p_value p_adjust
<chr> <dbl> <dbl>
1 p__Bacillota_A 0.0000575 0.000345
2 p__Bacillota_C 0.000000522 0.00000627
3 p__Campylobacterota 0.0116 0.0464 
Family
# A tibble: 2 × 3
Family p_value p_adjust
<chr> <dbl> <dbl>
1 f__Eggerthellaceae 0.0000343 0.000823
2 f__Selenomonadaceae 0.0000000404 0.00000194
Genera
# A tibble: 5 × 3
Genus p_value p_adjust
<chr> <dbl> <dbl>
1 g__Blautia_A 0.00000825 0.000573
2 g__Megamonas 0.0000000404 0.00000562
3 g__Oliverpabstia 0.00134 0.0374
4 g__Paraprevotella 0.000679 0.0236
5 g__Slackia_A 0.0000343 0.00159 
Mann–Whitney U test (CLR data, considering structural zeros)
Phylum
# A tibble: 2 × 3
Phylum p_value p_adjust
<chr> <dbl> <dbl>
1 p__Actinomycetota 0.000609 0.00670
2 p__Bacillota_A 0.00269 0.0148 
Family
# A tibble: 3 × 3
Family p_value p_adjust
<chr> <dbl> <dbl>
1 f__Campylobacteraceae 0.00282 0.0355
2 f__Coriobacteriaceae 0.000196 0.00705
3 f__Enterobacteriaceae 0.00296 0.0355 
Genera
# A tibble: 10 × 3
Genus p_value p_adjust
<chr> <dbl> <dbl>
1 d__Bacteria_p__Deferribacterota_c__Deferribacteres_o__Defer… 1.28e-3 2.28e-2
2 g__Allobaculum 3.97e-9 4.25e-7
3 g__Blautia_A 3.75e-6 2.01e-4
4 g__Campylobacter_D 2.82e-3 3.35e-2
5 g__Collinsella 1.96e-4 4.19e-3
6 g__Escherichia 2.11e-3 3.22e-2
7 g__Lawsonibacter 3.25e-3 3.48e-2
8 g__Mediterraneibacter 2.82e-3 3.35e-2
9 g__Oliverpabstia 1.74e-4 4.19e-3
10 g__Paraprevotella 1.54e-4 4.19e-3
RDA
Permutation test for rda under reduced model
Permutation: free
Number of permutations: 999
Model: rda(formula = count_crl_t ~ region, data = design)
Df Variance F Pr(>F)
Model 1 225.61 13.75 0.001 ***
Residual 56 918.86
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1Permutation test for rda under reduced model
Permutation: free
Number of permutations: 999
Model: rda(formula = hel1 ~ region, data = design)
Df Variance F Pr(>F)
Model 1 0.08720 15.614 0.001 ***
Residual 56 0.31275
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1$r.squared
[1] 0.1971289
$adj.r.squared
[1] 0.1827919$r.squared
[1] 0.2180283
$adj.r.squared
[1] 0.2040645Permutation test for rda under reduced model
Permutation: free
Number of permutations: 999
Model: rda(formula = count_crl_t ~ region, data = design)
Df Variance F Pr(>F)
Model 1 225.61 13.75 0.001 ***
Residual 56 918.86
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1Permutation test for rda under reduced model
Terms added sequentially (first to last)
Permutation: free
Number of permutations: 999
Model: rda(formula = count_crl_t ~ region, data = design)
Df Variance F Pr(>F)
region 1 225.61 13.75 0.001 ***
Residual 56 918.86
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1Permutation test for rda under reduced model
Forward tests for axes
Permutation: free
Number of permutations: 999
Model: rda(formula = count_crl_t ~ region, data = design)
Df Variance F Pr(>F)
RDA1 1 225.61 13.75 0.001 ***
Residual 56 918.86
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Enrichment analysis between location
Edger
regionIttoqqortoormii
Down 124
NotSig 178
Up 253
Deseq (without considering structural zeros)
Deseq (considering structural zeros)
Ancombc2 (considering structural zeros)
ALDEx2 (considering structural zeros)
Significance based on posterior probabilities
Linda (without considering structural zeros)
Linda (considering structural zeros)
